3D structure

PDB id
8VOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
6 Å

Loop

Sequence
UAG*CAAAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VOP_068 not in the Motif Atlas
Geometric match to IL_5J7L_254
Geometric discrepancy: 0.0984
The information below is about IL_5J7L_254
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_69440.3
Basepair signature
cWW-L-R-cSH-cWW
Number of instances in this motif group
3

Unit IDs

8VOP|1|a|U|293
8VOP|1|a|A|294
8VOP|1|a|G|295
*
8VOP|1|a|C|343
8VOP|1|a|A|344
8VOP|1|a|A|345
8VOP|1|a|A|346
8VOP|1|a|A|347

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L24

Coloring options:


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