IL_8VOP_074

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8VOP|1|a|G|801, 8VOP|1|a|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOP_074 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0688

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8VOP|1|a|G|674
8VOP|1|a|A|675
8VOP|1|a|A|676
8VOP|1|a|A|677
8VOP|1|a|C|678
*
8VOP|1|a|G|799
8VOP|1|a|A|800
8VOP|1|a|G|801
8VOP|1|a|A|802
8VOP|1|a|U|803
8VOP|1|a|A|804
8VOP|1|a|G|805
8VOP|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L4

Chain u

50S ribosomal protein L15