IL_8VOP_115

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

8VOP|1|a|U|1559

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOP_115 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.0933

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8VOP|1|a|G|1432
8VOP|1|a|A|1433
8VOP|1|a|A|1434
8VOP|1|a|G|1435
*
8VOP|1|a|C|1557
8VOP|1|a|C|1558
8VOP|1|a|U|1559
8VOP|1|a|G|1560
8VOP|1|a|C|1561

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2