IL_8VOQ_096

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8VOQ|1|a|A|1143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOQ_096 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0962

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8VOQ|1|a|U|1018
8VOQ|1|a|U|1019
8VOQ|1|a|A|1020
8VOQ|1|a|A|1021
8VOQ|1|a|G|1022
8VOQ|1|a|U|1023
8VOQ|1|a|G|1024
*
8VOQ|1|a|C|1140
8VOQ|1|a|U|1141
8VOQ|1|a|A|1142
8VOQ|1|a|A|1143
8VOQ|1|a|A|1144

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L36

Chain s

50S ribosomal protein L13