IL_8VOQ_158

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8VOQ|1|a|G|2780

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOQ_158 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.0682

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8VOQ|1|a|C|2636
8VOQ|1|a|U|2637
8VOQ|1|a|G|2638
8VOQ|1|a|A|2639
8VOQ|1|a|G|2640
*
8VOQ|1|a|C|2774
8VOQ|1|a|G|2775
8VOQ|1|a|A|2776
8VOQ|1|a|G|2777
8VOQ|1|a|A|2778
8VOQ|1|a|U|2779
8VOQ|1|a|G|2780
8VOQ|1|a|A|2781
8VOQ|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13