IL_8VOR_021

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOR_021 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1396

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8VOR|1|D|G|450
8VOR|1|D|A|451
8VOR|1|D|A|452
8VOR|1|D|G|453
8VOR|1|D|G|454
8VOR|1|D|G|455
*
8VOR|1|D|C|477
8VOR|1|D|A|478
8VOR|1|D|U|479
8VOR|1|D|U|480
8VOR|1|D|G|481
8VOR|1|D|A|482
8VOR|1|D|C|483

Current chains

Chain D

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16