IL_8VOR_039

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOR_039 not in the Motif Atlas

Geometric match to IL_8CRE_447

Geometric discrepancy: 0.1393

The information below is about IL_8CRE_447

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

8VOR|1|D|G|953
8VOR|1|D|G|954
*
8VOR|1|D|C|1226
8VOR|1|D|A|1227
8VOR|1|D|C|1228

Current chains

Chain D

16S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain W

30S ribosomal protein S19

Chain X

30S ribosomal protein S13