3D structure

PDB id
8VOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VOR_065 not in the Motif Atlas
Geometric match to IL_5J7L_251
Geometric discrepancy: 0.0509
The information below is about IL_5J7L_251
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

8VOR|1|a|C|239
8VOR|1|a|C|240
8VOR|1|a|A|241
8VOR|1|a|G|242
8VOR|1|a|U|243
8VOR|1|a|A|244
8VOR|1|a|G|245
*
8VOR|1|a|C|253
8VOR|1|a|G|254
8VOR|1|a|A|255
8VOR|1|a|A|256
8VOR|1|a|C|257
8VOR|1|a|G|258

Current chains

Chain a
23S rRNA

Nearby chains

Chain o
50S ribosomal protein L35
Chain u
50S ribosomal protein L15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0702 s