IL_8VOR_074

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8VOR|1|a|G|801, 8VOR|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOR_074 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0688

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8VOR|1|a|G|674
8VOR|1|a|A|675
8VOR|1|a|A|676
8VOR|1|a|A|677
8VOR|1|a|C|678
*
8VOR|1|a|G|799
8VOR|1|a|A|800
8VOR|1|a|G|801
8VOR|1|a|A|802
8VOR|1|a|U|803
8VOR|1|a|A|804
8VOR|1|a|G|805
8VOR|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L4

Chain u

50S ribosomal protein L15