IL_8VPK_041

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

8VPK|1|A|C|1260, 8VPK|1|A|A|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_041 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0971

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8VPK|1|A|C|1136
8VPK|1|A|U|1137
8VPK|1|A|A|1138
8VPK|1|A|A|1139
8VPK|1|A|G|1140
8VPK|1|A|U|1141
8VPK|1|A|G|1142
*
8VPK|1|A|C|1258
8VPK|1|A|U|1259
8VPK|1|A|C|1260
8VPK|1|A|A|1261
8VPK|1|A|A|1262
8VPK|1|A|G|1263

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S Ribosomal Protein L13

Chain f

50S ribosomal protein L36