IL_8VPK_074

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

8VPK|1|A|G|2018, 8VPK|1|A|U|2033, 8VPK|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_074 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.25

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8VPK|1|A|U|2015
8VPK|1|A|G|2016
8VPK|1|A|C|2017
8VPK|1|A|G|2018
8VPK|1|A|A|2019
8VPK|1|A|A|2020
8VPK|1|A|G|2021
*
8VPK|1|A|C|2030
8VPK|1|A|G|2031
8VPK|1|A|A|2032
8VPK|1|A|U|2033
8VPK|1|A|G|2034
8VPK|1|A|U|2035
8VPK|1|A|A|2036
8VPK|1|A|U|2037
8VPK|1|A|A|2038

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2