IL_8VPK_118
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CGAUGAUAC*GAAAAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VPK_118 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.2975
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VPK|1|B|C|72
8VPK|1|B|G|73
8VPK|1|B|A|74
8VPK|1|B|U|75
8VPK|1|B|G|76
8VPK|1|B|A|77
8VPK|1|B|U|78
8VPK|1|B|A|79
8VPK|1|B|C|80
*
8VPK|1|B|G|95
8VPK|1|B|A|96
8VPK|1|B|A|97
8VPK|1|B|A|98
8VPK|1|B|A|99
8VPK|1|B|G|100
8VPK|1|B|U|101
8VPK|1|B|A|102
8VPK|1|B|G|103
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- Large ribosomal subunit protein uL16
- Chain W
- 50S ribosomal protein L25
Coloring options: