IL_8VR4_080

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

8VR4|1|A|G|2018, 8VR4|1|A|U|2033, 8VR4|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_080 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.2939

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8VR4|1|A|U|2015
8VR4|1|A|G|2016
8VR4|1|A|C|2017
8VR4|1|A|G|2018
8VR4|1|A|A|2019
8VR4|1|A|A|2020
8VR4|1|A|G|2021
*
8VR4|1|A|C|2030
8VR4|1|A|G|2031
8VR4|1|A|A|2032
8VR4|1|A|U|2033
8VR4|1|A|G|2034
8VR4|1|A|U|2035
8VR4|1|A|A|2036
8VR4|1|A|U|2037
8VR4|1|A|A|2038

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2