3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGG*CGAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VS9_006 not in the Motif Atlas
Geometric match to IL_5J7L_006
Geometric discrepancy: 0.205
The information below is about IL_5J7L_006
Detailed Annotation
Minor groove platform with extra cWW
Broad Annotation
Minor groove platform
Motif group
IL_90351.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
8

Unit IDs

8VS9|1|16S|C|67
8VS9|1|16S|G|68
8VS9|1|16S|G|69
*
8VS9|1|16S|C|99
8VS9|1|16S|G|100
8VS9|1|16S|A|101
8VS9|1|16S|G|102

Current chains

Chain 16S
16S ribosomal RNA

Nearby chains

Chain S20
30S ribosomal protein S20

Coloring options:


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