IL_8VS9_012
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUG*CAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: AUG,CAU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_012 not in the Motif Atlas
- Geometric match to IL_6RA4_002
- Geometric discrepancy: 0.137
- The information below is about IL_6RA4_002
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8VS9|1|16S|A|139
8VS9|1|16S|U|140
8VS9|1|16S|G|141
*
8VS9|1|16S|C|222
8VS9|1|16S|A|223
8VS9|1|16S|U|224
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S20
- 30S ribosomal protein S20
Coloring options: