3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AUG*CAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: AUG,CAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VS9_012 not in the Motif Atlas
Geometric match to IL_6RA4_002
Geometric discrepancy: 0.137
The information below is about IL_6RA4_002
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

8VS9|1|16S|A|139
8VS9|1|16S|U|140
8VS9|1|16S|G|141
*
8VS9|1|16S|C|222
8VS9|1|16S|A|223
8VS9|1|16S|U|224

Current chains

Chain 16S
16S ribosomal RNA

Nearby chains

Chain S20
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.8673 s