3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GG*UGACC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VS9_019 not in the Motif Atlas
Homologous match to IL_5J7L_016
Geometric discrepancy: 0.2301
The information below is about IL_5J7L_016
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

8VS9|1|16S|G|292
8VS9|1|16S|G|293
*
8VS9|1|16S|U|304
8VS9|1|16S|G|305
8VS9|1|16S|A|306
8VS9|1|16S|C|307
8VS9|1|16S|C|308

Current chains

Chain 16S
16S ribosomal RNA

Nearby chains

Chain S16
30S ribosomal protein S16

Coloring options:


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