IL_8VS9_030

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAAG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAAG,CUUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_030 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2264

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VS9|1|16S|A|459
8VS9|1|16S|A|460
8VS9|1|16S|A|461
8VS9|1|16S|G|462
*
8VS9|1|16S|C|470
8VS9|1|16S|U|471
8VS9|1|16S|U|472
8VS9|1|16S|U|473

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S16

30S ribosomal protein S16