3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UC*GAA
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VS9_041 not in the Motif Atlas
Homologous match to IL_5J7L_032
Geometric discrepancy: 0.342
The information below is about IL_5J7L_032
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_26793.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

8VS9|1|16S|U|659
8VS9|1|16S|C|660
*
8VS9|1|16S|G|745
8VS9|1|16S|A|746
8VS9|1|16S|A|747

Current chains

Chain 16S
16S ribosomal RNA

Nearby chains

Chain S15
Small ribosomal subunit protein uS15

Coloring options:


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