IL_8VS9_042

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

8VS9|1|16S|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_042 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1062

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VS9|1|16S|U|662
8VS9|1|16S|A|663
8VS9|1|16S|G|664
8VS9|1|16S|A|665
8VS9|1|16S|G|666
*
8VS9|1|16S|U|740
8VS9|1|16S|G|741
8VS9|1|16S|G|742
8VS9|1|16S|A|743

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S06

30S ribosomal protein S6

Chain S15

Small ribosomal subunit protein uS15

Chain S18

30S ribosomal protein S18