IL_8VS9_050

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_050 not in the Motif Atlas

Geometric match to IL_4KR9_002

Geometric discrepancy: 0.1936

The information below is about IL_4KR9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8VS9|1|16S|C|931
8VS9|1|16S|C|932
8VS9|1|16S|G|933
*
8VS9|1|16S|C|1384
8VS9|1|16S|G|1385
8VS9|1|16S|G|1386

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S05

30S ribosomal protein S5

Chain S07

30S ribosomal protein S7

Chain S09

Small ribosomal subunit protein uS9

Chain SMPB

SsrA-binding protein