IL_8VS9_053

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_053 not in the Motif Atlas

Geometric match to IL_5J7L_043

Geometric discrepancy: 0.2525

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8VS9|1|16S|G|993
8VS9|1|16S|A|994
8VS9|1|16S|C|995
8VS9|1|16S|A|996
8VS9|1|16S|U|997
*
8VS9|1|16S|A|1044
8VS9|1|16S|C|1045

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S14

Small ribosomal subunit protein uS14