IL_8VS9_062
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUGC*GAACUC
- Length
- 11 nucleotides
- Bulged bases
- 8VS9|1|16S|U|1126
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_062 not in the Motif Atlas
- Homologous match to IL_5J7L_051
- Geometric discrepancy: 0.2156
- The information below is about IL_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06691.1
- Basepair signature
- cWW-cWS-L-R-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8VS9|1|16S|G|1124
8VS9|1|16S|U|1125
8VS9|1|16S|U|1126
8VS9|1|16S|G|1127
8VS9|1|16S|C|1128
*
8VS9|1|16S|G|1144
8VS9|1|16S|A|1145
8VS9|1|16S|A|1146
8VS9|1|16S|C|1147
8VS9|1|16S|U|1148
8VS9|1|16S|C|1149
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S09
- Small ribosomal subunit protein uS9
- Chain S10
- 30S ribosomal protein S10
Coloring options: