IL_8VS9_069
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 8VS9|1|16S|C|1400, 8VS9|1|16S|A|1503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_069 not in the Motif Atlas
- Geometric match to IL_5J7L_058
- Geometric discrepancy: 0.1552
- The information below is about IL_5J7L_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8VS9|1|16S|C|1399
8VS9|1|16S|C|1400
8VS9|1|16S|G|1401
*
8VS9|1|16S|C|1501
8VS9|1|16S|A|1502
8VS9|1|16S|A|1503
8VS9|1|16S|G|1504
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain SMPB
- SsrA-binding protein
- Chain TMRN
- Transfer-messenger RNA; tmRNA
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