IL_8VS9_074

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_074 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1233

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

8VS9|1|16S|G|1416
8VS9|1|16S|G|1417
8VS9|1|16S|A|1418
8VS9|1|16S|G|1419
*
8VS9|1|16S|U|1481
8VS9|1|16S|G|1482
8VS9|1|16S|A|1483
8VS9|1|16S|C|1484

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain 23S

Large subunit ribosomal RNA; LSU rRNA

Chain S12

30S ribosomal protein S12