IL_8VS9_084

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_084 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.116

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8VS9|1|23S|C|239
8VS9|1|23S|C|240
8VS9|1|23S|A|241
8VS9|1|23S|G|242
8VS9|1|23S|U|243
8VS9|1|23S|A|244
8VS9|1|23S|G|245
*
8VS9|1|23S|C|253
8VS9|1|23S|G|254
8VS9|1|23S|A|255
8VS9|1|23S|A|256
8VS9|1|23S|C|257
8VS9|1|23S|G|258

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L15

50S ribosomal protein L15

Chain L35

50S ribosomal protein L35