IL_8VS9_094
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8VS9|1|23S|G|801, 8VS9|1|23S|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_094 not in the Motif Atlas
- Geometric match to IL_5J7L_260
- Geometric discrepancy: 0.163
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VS9|1|23S|G|674
8VS9|1|23S|A|675
8VS9|1|23S|A|676
8VS9|1|23S|A|677
8VS9|1|23S|C|678
*
8VS9|1|23S|G|799
8VS9|1|23S|A|800
8VS9|1|23S|G|801
8VS9|1|23S|A|802
8VS9|1|23S|U|803
8VS9|1|23S|A|804
8VS9|1|23S|G|805
8VS9|1|23S|C|806
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L04
- 50S ribosomal protein L4
- Chain L15
- 50S ribosomal protein L15
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