IL_8VS9_099

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8VS9|1|23S|G|776, 8VS9|1|23S|A|788, 8VS9|1|23S|A|789, 8VS9|1|23S|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_099 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.147

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8VS9|1|23S|G|775
8VS9|1|23S|G|776
8VS9|1|23S|G|777
*
8VS9|1|23S|C|787
8VS9|1|23S|A|788
8VS9|1|23S|A|789
8VS9|1|23S|U|790
8VS9|1|23S|C|791

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2

Chain L22

50S ribosomal protein L22

Chain L34

50S ribosomal protein L34