IL_8VS9_101
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AAUU*AU
- Length
- 6 nucleotides
- Bulged bases
- 8VS9|1|23S|U|846
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_101 not in the Motif Atlas
- Homologous match to IL_5J7L_267
- Geometric discrepancy: 0.1664
- The information below is about IL_5J7L_267
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_90729.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 30
Unit IDs
8VS9|1|23S|A|844
8VS9|1|23S|A|845
8VS9|1|23S|U|846
8VS9|1|23S|U|847
*
8VS9|1|23S|A|933
8VS9|1|23S|U|934
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L30
- Large ribosomal subunit protein uL30
Coloring options: