3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AAUU*AU
Length
6 nucleotides
Bulged bases
8VS9|1|23S|U|846
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VS9_101 not in the Motif Atlas
Homologous match to IL_5J7L_267
Geometric discrepancy: 0.1664
The information below is about IL_5J7L_267
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

8VS9|1|23S|A|844
8VS9|1|23S|A|845
8VS9|1|23S|U|846
8VS9|1|23S|U|847
*
8VS9|1|23S|A|933
8VS9|1|23S|U|934

Current chains

Chain 23S
23S ribosomal RNA

Nearby chains

Chain L30
Large ribosomal subunit protein uL30

Coloring options:


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