IL_8VS9_111
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 8VS9|1|23S|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_111 not in the Motif Atlas
- Homologous match to IL_7A0S_033
- Geometric discrepancy: 0.131
- The information below is about IL_7A0S_033
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
8VS9|1|23S|C|998
8VS9|1|23S|U|999
8VS9|1|23S|A|1000
8VS9|1|23S|A|1001
8VS9|1|23S|G|1002
*
8VS9|1|23S|C|1153
8VS9|1|23S|G|1154
8VS9|1|23S|A|1155
8VS9|1|23S|A|1156
8VS9|1|23S|G|1157
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain 5S
- 5S ribosomal RNA; 5S rRNA
- Chain L20
- 50S ribosomal protein L20
- Chain L21
- Ribosomal protein L21
- Chain L30
- Large ribosomal subunit protein uL30
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