IL_8VS9_112

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_112 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.1519

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8VS9|1|23S|U|1004
8VS9|1|23S|C|1005
8VS9|1|23S|C|1006
8VS9|1|23S|C|1007
8VS9|1|23S|A|1008
8VS9|1|23S|A|1009
8VS9|1|23S|A|1010
8VS9|1|23S|G|1011
*
8VS9|1|23S|C|1150
8VS9|1|23S|A|1151

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L13

50S ribosomal protein L13

Chain L20

50S ribosomal protein L20