IL_8VS9_117
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_117 not in the Motif Atlas
- Homologous match to IL_5J7L_283
- Geometric discrepancy: 0.197
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8VS9|1|23S|G|1038
8VS9|1|23S|A|1039
8VS9|1|23S|A|1040
8VS9|1|23S|G|1041
*
8VS9|1|23S|C|1114
8VS9|1|23S|G|1115
8VS9|1|23S|G|1116
8VS9|1|23S|C|1117
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L06
- 50S ribosomal protein L6
- Chain L16
- 50S ribosomal protein L16
- Chain L25
- 50S ribosomal protein L25
- Chain L36
- 50S ribosomal protein L36
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