IL_8VS9_118

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

8VS9|1|23S|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_118 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.3067

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8VS9|1|23S|C|1043
8VS9|1|23S|C|1044
8VS9|1|23S|C|1045
8VS9|1|23S|A|1046
8VS9|1|23S|G|1047
8VS9|1|23S|A|1048
8VS9|1|23S|C|1049
8VS9|1|23S|A|1050
8VS9|1|23S|G|1051
*
8VS9|1|23S|U|1108
8VS9|1|23S|C|1109
8VS9|1|23S|G|1110
8VS9|1|23S|A|1111
8VS9|1|23S|G|1112

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L06

50S ribosomal protein L6

Chain L10

50S ribosomal protein L10

Chain L36

50S ribosomal protein L36