IL_8VS9_123

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8VS9|1|23S|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_123 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1322

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8VS9|1|23S|C|1208
8VS9|1|23S|U|1209
8VS9|1|23S|G|1210
8VS9|1|23S|C|1211
8VS9|1|23S|G|1212
8VS9|1|23S|A|1213
8VS9|1|23S|A|1214
8VS9|1|23S|G|1215
*
8VS9|1|23S|U|1234
8VS9|1|23S|G|1235
8VS9|1|23S|G|1236
8VS9|1|23S|A|1237
8VS9|1|23S|G|1238

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L20

50S ribosomal protein L20