IL_8VS9_166

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_166 not in the Motif Atlas

Geometric match to IL_3TZR_003

Geometric discrepancy: 0.3577

The information below is about IL_3TZR_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8VS9|1|23S|G|2107
8VS9|1|23S|A|2108
8VS9|1|23S|U|2109
8VS9|1|23S|G|2110
*
8VS9|1|23S|C|2179
8VS9|1|23S|U|2180
8VS9|1|23S|U|2181
8VS9|1|23S|U|2182

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain ETRN

Transfer RNA; tRNA

Chain L1

50S ribosomal protein L1