IL_8VS9_182

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8VS9|1|23S|G|2576, 8VS9|1|23S|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_182 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.1632

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8VS9|1|23S|C|2510
8VS9|1|23S|U|2511
8VS9|1|23S|C|2512
*
8VS9|1|23S|G|2574
8VS9|1|23S|C|2575
8VS9|1|23S|G|2576
8VS9|1|23S|A|2577
8VS9|1|23S|G|2578

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L03

50S ribosomal protein L3

Chain L32

50S ribosomal protein L32