IL_8VS9_187
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_187 not in the Motif Atlas
- Geometric match to IL_5J7L_346
- Geometric discrepancy: 0.1299
- The information below is about IL_5J7L_346
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VS9|1|23S|C|2652
8VS9|1|23S|U|2653
8VS9|1|23S|A|2654
8VS9|1|23S|G|2655
8VS9|1|23S|U|2656
8VS9|1|23S|A|2657
8VS9|1|23S|C|2658
*
8VS9|1|23S|G|2663
8VS9|1|23S|G|2664
8VS9|1|23S|A|2665
8VS9|1|23S|C|2666
8VS9|1|23S|C|2667
8VS9|1|23S|G|2668
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L06
- 50S ribosomal protein L6
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