IL_8VS9_195

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_195 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.1338

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

8VS9|1|23S|U|2847
8VS9|1|23S|G|2848
8VS9|1|23S|U|2849
8VS9|1|23S|A|2850
8VS9|1|23S|A|2851
8VS9|1|23S|G|2852
*
8VS9|1|23S|U|2865
8VS9|1|23S|U|2866
8VS9|1|23S|G|2867
8VS9|1|23S|A|2868
8VS9|1|23S|G|2869

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L17

Large ribosomal subunit protein bL17

Chain L19

50S ribosomal protein L19