IL_8VS9_199

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACCCC*GAACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_199 not in the Motif Atlas

Geometric match to IL_5J7L_358

Geometric discrepancy: 0.253

The information below is about IL_5J7L_358

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.11

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

9

Unit IDs

8VS9|1|5S|A|34
8VS9|1|5S|C|35
8VS9|1|5S|C|36
8VS9|1|5S|C|37
8VS9|1|5S|C|38
*
8VS9|1|5S|G|44
8VS9|1|5S|A|45
8VS9|1|5S|A|46
8VS9|1|5S|C|47
8VS9|1|5S|U|48

Current chains

Chain 5S

5S ribosomal RNA

Nearby chains

Chain 23S

Large subunit ribosomal RNA; LSU rRNA

Chain L05

50S ribosomal protein L5

Chain L18

50S ribosomal protein L18

Chain L31

Large ribosomal subunit protein bL31