IL_8VS9_202
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGG*UUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_202 not in the Motif Atlas
- Homologous match to IL_4V8Q_188
- Geometric discrepancy: 0.3277
- The information below is about IL_4V8Q_188
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
8VS9|1|TMRN|G|22
8VS9|1|TMRN|G|23
8VS9|1|TMRN|G|24
*
8VS9|1|TMRN|U|329
8VS9|1|TMRN|U|330
8VS9|1|TMRN|C|331
Current chains
- Chain TMRN
- TMRN
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain L05
- 50S ribosomal protein L5
- Chain SMPB
- SsrA-binding protein
Coloring options: