IL_8VS9_208

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGC*GCUU

Length

7 nucleotides

Bulged bases

8VS9|1|TMRN|U|131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_208 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2542

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8VS9|1|TMRN|A|113
8VS9|1|TMRN|G|114
8VS9|1|TMRN|C|115
*
8VS9|1|TMRN|G|129
8VS9|1|TMRN|C|130
8VS9|1|TMRN|U|131
8VS9|1|TMRN|U|132

Current chains

Chain TMRN

TMRN

Nearby chains

Chain S03

30S ribosomal protein S3