IL_8VS9_219
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAGUACGG*UUAAAAC
- Length
- 16 nucleotides
- Bulged bases
- 8VS9|1|16S|G|890
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_219 not in the Motif Atlas
- Homologous match to IL_6CZR_146
- Geometric discrepancy: 0.1739
- The information below is about IL_6CZR_146
- Detailed Annotation
- 9x7 Sarcin-Ricin with inserted C; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_68633.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8VS9|1|16S|G|887
8VS9|1|16S|G|888
8VS9|1|16S|A|889
8VS9|1|16S|G|890
8VS9|1|16S|U|891
8VS9|1|16S|A|892
8VS9|1|16S|C|893
8VS9|1|16S|G|894
8VS9|1|16S|G|895
*
8VS9|1|16S|U|904
8VS9|1|16S|U|905
8VS9|1|16S|A|906
8VS9|1|16S|A|907
8VS9|1|16S|A|908
8VS9|1|16S|A|909
8VS9|1|16S|C|910
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain S12
- 30S ribosomal protein S12
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