IL_8VS9_221

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_221 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.2223

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8VS9|1|16S|C|1303
8VS9|1|16S|G|1304
8VS9|1|16S|G|1305
8VS9|1|16S|A|1306
8VS9|1|16S|U|1307
8VS9|1|16S|U|1308
*
8VS9|1|16S|A|1329
8VS9|1|16S|U|1330
8VS9|1|16S|G|1331
8VS9|1|16S|A|1332
8VS9|1|16S|A|1333
8VS9|1|16S|G|1334

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S13

30S ribosomal protein S13