IL_8VS9_228

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_228 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1294

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8VS9|1|23S|U|1851
8VS9|1|23S|U|1852
8VS9|1|23S|A|1853
8VS9|1|23S|A|1854
8VS9|1|23S|U|1855
8VS9|1|23S|U|1856
8VS9|1|23S|G|1857
8VS9|1|23S|A|1858
8VS9|1|23S|U|1859
8VS9|1|23S|G|1860
*
8VS9|1|23S|U|1882
8VS9|1|23S|U|1883
8VS9|1|23S|G|1884
8VS9|1|23S|A|1885
8VS9|1|23S|U|1886
8VS9|1|23S|C|1887
8VS9|1|23S|G|1888
8VS9|1|23S|A|1889
8VS9|1|23S|A|1890
8VS9|1|23S|G|1891

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain ETRN

Transfer RNA; tRNA

Chain L1

50S ribosomal protein L1