IL_8VSA_065

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_065 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.2303

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8VSA|1|16S|C|1303
8VSA|1|16S|G|1304
8VSA|1|16S|G|1305
8VSA|1|16S|A|1306
8VSA|1|16S|U|1307
8VSA|1|16S|U|1308
*
8VSA|1|16S|A|1329
8VSA|1|16S|U|1330
8VSA|1|16S|G|1331
8VSA|1|16S|A|1332
8VSA|1|16S|A|1333
8VSA|1|16S|G|1334

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S13

30S ribosomal protein S13