IL_8VSA_143

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8VSA|1|23S|A|1801, 8VSA|1|23S|C|1816, 8VSA|1|23S|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_143 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0884

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8VSA|1|23S|U|1798
8VSA|1|23S|G|1799
8VSA|1|23S|C|1800
8VSA|1|23S|A|1801
8VSA|1|23S|A|1802
8VSA|1|23S|A|1803
8VSA|1|23S|C|1804
*
8VSA|1|23S|G|1813
8VSA|1|23S|G|1814
8VSA|1|23S|A|1815
8VSA|1|23S|C|1816
8VSA|1|23S|G|1817
8VSA|1|23S|U|1818
8VSA|1|23S|A|1819
8VSA|1|23S|U|1820
8VSA|1|23S|A|1821

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 16S

Small subunit ribosomal RNA; SSU rRNA

Chain L02

50S ribosomal protein L2