IL_8VTU_100

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

8VTU|1|1A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTU_100 not in the Motif Atlas

Homologous match to IL_8VTW_101

Geometric discrepancy: 0.0294

The information below is about IL_8VTW_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.2

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8VTU|1|1A|U|2636
8VTU|1|1A|U|2637
8VTU|1|1A|G|2638
8VTU|1|1A|A|2639
8VTU|1|1A|G|2640
*
8VTU|1|1A|C|2774
8VTU|1|1A|A|2775
8VTU|1|1A|A|2776
8VTU|1|1A|G|2777
8VTU|1|1A|A|2778
8VTU|1|1A|U|2779
8VTU|1|1A|G|2780
8VTU|1|1A|A|2781
8VTU|1|1A|G|2782

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13