IL_8VTW_308

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8VTW|1|2a|A|532, 8VTW|1|2a|U|534, 8VTW|1|2a|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_308 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1064

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VTW|1|2a|G|515
8VTW|1|2a|PSU|516
8VTW|1|2a|G|517
8VTW|1|2a|C|518
8VTW|1|2a|C|519
8VTW|1|2a|A|520
8VTW|1|2a|G|521
*
8VTW|1|2a|C|528
8VTW|1|2a|G|529
8VTW|1|2a|G|530
8VTW|1|2a|U|531
8VTW|1|2a|A|532
8VTW|1|2a|A|533
8VTW|1|2a|U|534
8VTW|1|2a|A|535
8VTW|1|2a|C|536

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12

Chain 2y

Ribosome-associated inhibitor A