IL_8VUP_064

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8VUP|1|1|A|1801, 8VUP|1|1|C|1816, 8VUP|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VUP_064 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.1403

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8VUP|1|1|U|1798
8VUP|1|1|G|1799
8VUP|1|1|C|1800
8VUP|1|1|A|1801
8VUP|1|1|A|1802
8VUP|1|1|A|1803
8VUP|1|1|C|1804
*
8VUP|1|1|G|1813
8VUP|1|1|G|1814
8VUP|1|1|A|1815
8VUP|1|1|C|1816
8VUP|1|1|G|1817
8VUP|1|1|U|1818
8VUP|1|1|A|1819
8VUP|1|1|U|1820
8VUP|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2