IL_8VVP_154

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

8VVP|1|WA|U|4636, 8VVP|1|WA|U|4638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_154 not in the Motif Atlas

Geometric match to IL_8P9A_346

Geometric discrepancy: 0.252

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98200.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

8VVP|1|WA|U|4634
8VVP|1|WA|G|4635
8VVP|1|WA|U|4636
8VVP|1|WA|A|4637
8VVP|1|WA|U|4638
8VVP|1|WA|G|4639
*
8VVP|1|WA|C|4664
8VVP|1|WA|G|4665
8VVP|1|WA|A|4666
8VVP|1|WA|A|4667
8VVP|1|WA|G|4668

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL2

Chain CA

L31

Chain V

uL24