IL_8VVQ_001

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_001 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1096

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVQ|1|SA|U|2
8VVQ|1|SA|C|3
8VVQ|1|SA|U|4
*
8VVQ|1|SA|A|69
8VVQ|1|SA|A|70
8VVQ|1|SA|A|71

Current chains

Chain SA

P-site tRNA

Nearby chains

Chain I

L10

Chain WA

Large subunit ribosomal RNA; LSU rRNA